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Raw Signal Density Graphs of iPS DF 19.11 Cell Line Histone H3K4me3 ChIP-Seq Data
Illumina Histone H3K4me3 ChIP-Seq read mappings from the iPS DF 19.11 Cell Line, Library SK475, were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/11/21: ANALYSIS XML file 'ucsd.chip-seq.level.2.xml' uploaded
alias: renlab.H3K4me3.iPS-19.11.02.01.hg19.level.2.release.5
Analysis Center: EDACC Analysis File Type: .wig Analysis File Name: UCSD.iPS_DF_19.11.H3K4me3.SK475.wig DATA_ANALYSIS_LEVEL: 2 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: In house programs and scripts SOFTWARE_VERSION: NA READ_EXTENSION: 200bp TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. GENOMIC_WINDOW: 20bp TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None RELEASE_NUMBER: Human Epigenome Atlas 5 BROWSER_TRACK_NAME: iD19.11 H3K4me3 75 BROWSER_TRACK_DESCRIPTION: UCSD iPS DF 19.11 Cell Line Histone H3K4me3 Library SK475 EA Release 5 NUMBER_OF_MAPPED_READS: 15,470,923 NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54 FINDPEAKS_SCORE: 0.16 FINDPEAKS_PERCENTILE: 26 HOTSPOT_SCORE: 0.31 HOTSPOT_PERCENTILE: 52 IROC_SCORE: 0.9 IROC_PERCENTILE: 15 POISSON_SCORE: 0.44 POISSON_PERCENTILE: 69 MAXIMUM_REPLICATE_CORRELATION: 0.65 |
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