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Mapping of Fetal Intestine Small Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on Fetal Intestine Small, Donor H-23864, Library DS17844 were mapped to the human genome using Pash.
Project News:
2011/11/7: ANALYSIS XML file 'uw.chromatin.accessibility.level.1.release5.xml' uploaded
alias: DS17844.hg19.level.1.release.5
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UW.Fetal_Intestine_Small.ChromatinAccessibility.H-23864.DS17844.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: Chromatin Accessibility GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 1 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None ALIGNMENT_POSTPROCESSING: None RELEASE_NUMBER: Human Epigenome Atlas 5 NUMBER_OF_MAPPED_READS: 35,340,931 NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 47 FINDPEAKS_SCORE: 0.4016 FINDPEAKS_PERCENTILE: 43 HOTSPOT_SCORE: 0.4043 HOTSPOT_PERCENTILE: 43 IROC_SCORE: 0.9948 IROC_PERCENTILE: 66 POISSON_SCORE: 0.4408 POISSON_PERCENTILE: 38 MAXIMUM_REPLICATE_CORRELATION: 0.99 |
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