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Chromatin accessibility assay of Moblized CD3 Primary Cells
Chromatin accessibility determination via DNase-seq
Project News:
2011/3/30:
EXPERIMENT XML file 'NREMC.experiment.chromatinAccessibility.DS16834.xml' uploaded
alias: DS16834
expected_number_runs: 2
center_name: NREMC
STUDY_REF: UwStam_NREMC_CA
SAMPLE_DESCRIPTOR: CD3.RO_01679
LIBRARY
LIBRARY_NAME: DS16834
LIBRARY_STRATEGY: DNase-Hypersensitivity
LIBRARY_SOURCE: GENOMIC
LIBRARY_SELECTION: DNAse
LIBRARY_LAYOUT: SINGLE
POOLING_STRATEGY: other
LIBRARY_CONSTRUCTION_PROTOCOL: Single read - Illumina
SPOT
NUMBER_OF_READS_PER_SPOT:
READ_INDEX: 0
READ_CLASS: Application Read
READ_TYPE: Forward
BASE_COORD: 1
PLATFORM
ILLUMINA
INSTRUMENT_MODEL: Illumina Genome Analyzer IIx
SEQUENCE_LENGTH: 36
BASE CALLS
SCS v2.8
QUALITY SCORES
SCS v2.8
ATTRIBUTES
EXPERIMENT_TYPE: Chromatin Accessibility
EXTRACTION_PROTOCOL: Qiagen minElut
DNASE_PROTOCOL: Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511?518 (2006)
expected_number_runs: 2
center_name: NREMC
STUDY_REF: UwStam_NREMC_CA
SAMPLE_DESCRIPTOR: CD3.RO_01679
LIBRARY
LIBRARY_NAME: DS16834
LIBRARY_STRATEGY: DNase-Hypersensitivity
LIBRARY_SOURCE: GENOMIC
LIBRARY_SELECTION: DNAse
LIBRARY_LAYOUT: SINGLE
POOLING_STRATEGY: other
LIBRARY_CONSTRUCTION_PROTOCOL: Single read - Illumina
SPOT
NUMBER_OF_READS_PER_SPOT:
READ_INDEX: 0
READ_CLASS: Application Read
READ_TYPE: Forward
BASE_COORD: 1
PLATFORM
ILLUMINA
INSTRUMENT_MODEL: Illumina Genome Analyzer IIx
SEQUENCE_LENGTH: 36
BASE CALLS
SCS v2.8
QUALITY SCORES
SCS v2.8
ATTRIBUTES
EXPERIMENT_TYPE: Chromatin Accessibility
EXTRACTION_PROTOCOL: Qiagen minElut
DNASE_PROTOCOL: Stamlab DNase Protocol, Sabo, P. J. et al. Nat Methods 3, 511?518 (2006)
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