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Chromatin accessibility assay of human CD34 Primary Cells
Chromatin accessibility determination via DNase-seq
Project News:
2010/3/24:
EXPERIMENT XML file 'NREMC.experiment.chromatinAccessibility.DS13196.xml' uploaded
alias: DS13196
expected_number_runs: 3
expected_number_spots: 30000000
expected_number_reads: 30000000
center_name: NREMC
STUDY_REF: UwStam_NREMC_CA
SAMPLE_DESCRIPTOR: RO 01562
LIBRARY
LIBRARY_NAME: DS13196
LIBRARY_STRATEGY: DNAse-Hypersensitivity
LIBRARY_SOURCE: GENOMIC
LIBRARY_SELECTION: DNAse
LIBRARY_LAYOUT: SINGLE
LIBRARY_CONSTRUCTION_PROTOCOL: Single read - Illumina
SPOT
NUMBER_OF_READS_PER_SPOT: 1
READ_INDEX: 0
READ_CLASS: Application Read
READ_TYPE: Forward
BASE_COORD: 1
PLATFORM
ILLUMINA
INSTRUMENT_MODEL: Illumina Genome Analyzer II
CYCLE_SEQUENCE: 36
CYCLE_COUNT: 36
BASE CALLS
SEQUENCE_SPACE: Base Space
BASE_CALLER: Bustard1.4.0
QUALITY SCORES
Quality Type: other
QUALITY_SCORER: Solexa primary analysis
NUMBER_OF_LEVELS: 80
MULTIPLIER: 1.0
ATTRIBUTES
EXPERIMENT_TYPE: Chromatin Accessibility
EXTRACTION_PROTOCOL: Qiagen minElut
DNASE_PROTOCOL: Stamlab DNase Protocol
expected_number_runs: 3
expected_number_spots: 30000000
expected_number_reads: 30000000
center_name: NREMC
STUDY_REF: UwStam_NREMC_CA
SAMPLE_DESCRIPTOR: RO 01562
LIBRARY
LIBRARY_NAME: DS13196
LIBRARY_STRATEGY: DNAse-Hypersensitivity
LIBRARY_SOURCE: GENOMIC
LIBRARY_SELECTION: DNAse
LIBRARY_LAYOUT: SINGLE
LIBRARY_CONSTRUCTION_PROTOCOL: Single read - Illumina
SPOT
NUMBER_OF_READS_PER_SPOT: 1
READ_INDEX: 0
READ_CLASS: Application Read
READ_TYPE: Forward
BASE_COORD: 1
PLATFORM
ILLUMINA
INSTRUMENT_MODEL: Illumina Genome Analyzer II
CYCLE_SEQUENCE: 36
CYCLE_COUNT: 36
BASE CALLS
SEQUENCE_SPACE: Base Space
BASE_CALLER: Bustard1.4.0
QUALITY SCORES
Quality Type: other
QUALITY_SCORER: Solexa primary analysis
NUMBER_OF_LEVELS: 80
MULTIPLIER: 1.0
ATTRIBUTES
EXPERIMENT_TYPE: Chromatin Accessibility
EXTRACTION_PROTOCOL: Qiagen minElut
DNASE_PROTOCOL: Stamlab DNase Protocol
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