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Chromatin accessibility assay of IMR90 Cell Line
Chromatin accessibility determination via DNase-seq
Project News:
2009/11/2: EXPERIMENT XML file 'NREMC.experiment.chromatinAccessibility.DS11759.xml' uploaded
alias: DS11759
expected_number_runs: 2 expected_number_spots: 25000000 expected_number_reads: 25000000 center_name: NREMC STUDY_REF: UwStam_NREMC_CA SAMPLE_DESCRIPTOR: IMR90 LIBRARY LIBRARY_NAME: DS11759 LIBRARY_STRATEGY: DNAse-Hypersensitivity LIBRARY_SOURCE: GENOMIC LIBRARY_SELECTION: DNAse LIBRARY_LAYOUT: SINGLE LIBRARY_CONSTRUCTION_PROTOCOL: Single read - Illumina SPOT SPOT_DECODE_SPEC: 1 0 Application Read Forward 1 PLATFORM ILLUMINA INSTRUMENT_MODEL: Illumina Genome Analyzer II CYCLE_SEQUENCE: 36 CYCLE_COUNT: 36 BASE CALLS SEQUENCE_SPACE: Base Space BASE_CALLER: Bustard1.4.0 QUALITY SCORES Quality Type: other QUALITY_SCORER: Solexa primary analysis NUMBER_OF_LEVELS: 80 MULTIPLIER: 1.0 ATTRIBUTES EXPERIMENT_TYPE: Chromatin Accessibility EXTRACTION_PROTOCOL: Qiagen minElut DNASE_PROTOCOL: Stamlab DNase Protocol |
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