Genboree BCM
Help Genboree Home
(This is a recently added feature. Report issues to Genboree Admin.)
Chromatin accessibility assay of IMR90 Cell Line
Chromatin accessibility determination via DNase-seq


Project News:
2009/11/2:
EXPERIMENT XML file 'NREMC.experiment.chromatinAccessibility.DS11759.xml' uploaded



alias: DS11759
expected_number_runs: 2
expected_number_spots: 25000000
expected_number_reads: 25000000
center_name: NREMC

STUDY_REF: UwStam_NREMC_CA
SAMPLE_DESCRIPTOR: IMR90

LIBRARY
LIBRARY_NAME: DS11759
LIBRARY_STRATEGY: DNAse-Hypersensitivity
LIBRARY_SOURCE: GENOMIC
LIBRARY_SELECTION: DNAse
LIBRARY_LAYOUT: SINGLE
LIBRARY_CONSTRUCTION_PROTOCOL: Single read - Illumina

SPOT
SPOT_DECODE_SPEC: 1 0 Application Read Forward 1

PLATFORM
ILLUMINA
INSTRUMENT_MODEL: Illumina Genome Analyzer II
CYCLE_SEQUENCE: 36
CYCLE_COUNT: 36

BASE CALLS
SEQUENCE_SPACE: Base Space
BASE_CALLER: Bustard1.4.0

QUALITY SCORES
Quality Type: other
QUALITY_SCORER: Solexa primary analysis
NUMBER_OF_LEVELS: 80
MULTIPLIER: 1.0

ATTRIBUTES
EXPERIMENT_TYPE: Chromatin Accessibility
EXTRACTION_PROTOCOL: Qiagen minElut
DNASE_PROTOCOL: Stamlab DNase Protocol

 

 


Bioinformatics Research Laboratory © 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030)