expected_number_runs: 2
expected_number_reads: 64458857
expected_number_spots: 64458857
center_name: BCCAGSC
alias: HS2632-1_705WMAAXX

STUDY_REF: UCSF_UBC_HREMP
SAMPLE_DESCRIPTOR: CD4 Naive TC007

LIBRARY
LIBRARY_NAME: HS2632
LIBRARY_STRATEGY: MeDIP-Seq
LIBRARY_SOURCE: GENOMIC
LIBRARY_SELECTION: 5-methylcytidine antibody
LIBRARY_LAYOUT: SINGLE
LIBRARY_CONSTRUCTION_PROTOCOL: Costello Lab MeDIP Protocol

SPOT
NUMBER_OF_READS_PER_SPOT: 1
READ_INDEX: 0
READ_CLASS: Application Read
READ_TYPE: Forward
BASE_COORD: 1

PLATFORM
ILLUMINA
INSTRUMENT_MODEL: Illumina Genome Analyzer II
CYCLE_SEQUENCE: ACGT
CYCLE_COUNT: 76

BASE CALLS
SEQUENCE_SPACE: Base Space
BASE_CALLER: Illumina 1.6.0 RTA 1.6.47.1

QUALITY SCORES
Quality Type: phred
QUALITY_SCORER: Illumina 1.6.0 RTA 1.6.47.1
NUMBER_OF_LEVELS: 80
MULTIPLIER: 1

ATTRIBUTES
EXPERIMENT_TYPE: DNA Methylation
EXTRACTION_PROTOCOL: Costello Lab MeDIP Protocol
EXTRACTION_PROTOCOL_TYPE_OF_SONICATOR: Diagenode Bioruptor
EXTRACTION_PROTOCOL_SONICATION_CYCLES: 25min
MeDIP_PROTOCOL: Costello Lab MeDIP Protocol
MeDIP_PROTOCOL_DNA_AMOUNT: 2ug
MeDIP_PROTOCOL_BEAD_TYPE: Protein A/G
MeDIP_PROTOCOL_BEAD_AMOUNT: 100ul
MeDIP_PROTOCOL_ANTIBODY_AMOUNT: 1ug
MeDIP_ANTIBODY: Methylcytidine
MeDIP_ANTIBODY_PROVIDER: Eurogentec
MeDIP_ANTIBODY_CATALOG: BI-MECY-0100
MeDIP_ANTIBODY_LOT: 80604