expected_number_runs: 1
expected_number_reads: 15042115
expected_number_spots: 15042115
center_name: BCCAGSC
alias: HS1987-1_430RMAAXX

STUDY_REF: UCSF_UBC_HREMP
SAMPLE_DESCRIPTOR: CD4 Naive Rep2

LIBRARY
LIBRARY_NAME: HS1987
LIBRARY_STRATEGY: ChIP-Seq
LIBRARY_SOURCE: GENOMIC
LIBRARY_SELECTION: ChIP
LIBRARY_LAYOUT: SINGLE
LIBRARY_CONSTRUCTION_PROTOCOL: Farnham Lab Protocol

SPOT
NUMBER_OF_READS_PER_SPOT: 1
READ_INDEX: 0
READ_CLASS: Application Read
READ_TYPE: Forward
BASE_COORD: 1

PLATFORM
ILLUMINA
INSTRUMENT_MODEL: Illumina Genome Analyzer II
CYCLE_SEQUENCE: ACGT
CYCLE_COUNT: 76

BASE CALLS
SEQUENCE_SPACE: Base Space
BASE_CALLER: Illumina 1.5.0 RTA 1.5.35.0 Bustard

QUALITY SCORES
Quality Type: phred
QUALITY_SCORER: Illumina 1.5.0 RTA 1.5.35.0 Bustard
NUMBER_OF_LEVELS: 80
MULTIPLIER: 1

ATTRIBUTES
EXPERIMENT_TYPE: Histone H3K9ac
EXTRACTION_PROTOCOL: Farnham Lab Protocol
EXTRACTION_PROTOCOL_TYPE_OF_SONICATOR: Bioruptor
EXTRACTION_PROTOCOL_SONICATION_CYCLES: 20 min
CHIP_PROTOCOL: Farnham Lab Protocol
CHIP_PROTOCOL_CHROMATIN_AMOUNT: 1ug
CHIP_PROTOCOL_BEAD_TYPE: Protein G Mag Beads
CHIP_PROTOCOL_BEAD_AMOUNT: 15 ul
CHIP_PROTOCOL_ANTIBODY_AMOUNT: 10ul
CHIP_ANTIBODY: H3K9ac
CHIP_ANTIBODY_PROVIDER: Cell Signaling Technology
CHIP_ANTIBODY_CATALOG: 9649S
CHIP_ANTIBODY_LOT: 1