expected_number_runs: 1
expected_number_reads: 9052922
expected_number_spots: 9052922
center_name: BCCAGSC
alias: HS1303-1_305H8AAXX

STUDY_REF: UCSF_UBC_HREMP
SAMPLE_DESCRIPTOR: HS1303-1

LIBRARY
LIBRARY_NAME: JOC13
LIBRARY_STRATEGY: MeDIP-Seq
LIBRARY_SOURCE: GENOMIC
LIBRARY_SELECTION: 5-methylcytidine antibody
LIBRARY_LAYOUT: SINGLE
LIBRARY_CONSTRUCTION_PROTOCOL: MeDIP_library_protocol

SPOT
SPOT_DECODE_SPEC: 1 0 Application Read Forward 1

PLATFORM
ILLUMINA
INSTRUMENT_MODEL: Illumina Genome Analyzer II
CYCLE_SEQUENCE: ACGT
CYCLE_COUNT: 76

BASE CALLS
SEQUENCE_SPACE: Base Space
BASE_CALLER: Bustard 1.3.2

QUALITY SCORES
Quality Type: phred
QUALITY_SCORER: Illumina Pipeline 1.32
NUMBER_OF_LEVELS: 80
MULTIPLIER: 1

ATTRIBUTES
EXPERIMENT_TYPE: DNA Methylation
EXTRACTION_PROTOCOL: NA
EXTRACTION_PROTOCOL_TYPE_OF_SONICATOR: Diagenode Bioruptor
EXTRACTION_PROTOCOL_SONICATION_CYCLES: 25 min
MeDIP_PROTOCOL: NA
MeDIP_PROTOCOL_DNA_AMOUNT: NA
MeDIP_PROTOCOL_BEAD_TYPE: Protein A/G Beads
MeDIP_PROTOCOL_BEAD_AMOUNT: 100 ul
MeDIP_PROTOCOL_ANTIBODY_AMOUNT: NA
MeDIP_ANTIBODY: Methylcytidine
MeDIP_ANTIBODY_PROVIDER: Eurogentec
MeDIP_ANTIBODY_CATALOG: BI-MECY-0100
MeDIP_ANTIBODY_LOT: 80604