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ChIP-Seq Input H1 batch2
ChIP-Seq WA01


Project News:
2009/8/17:
EXPERIMENT XML file 'experiment.HS1348.xml' uploaded



expected_number_runs: 1
expected_number_reads: 24497565
expected_number_spots: 24497565
center_name: BCCAGSC
alias: HS1348-1_305H8AAXX

STUDY_REF: UCSF_UBC_HREMP
SAMPLE_DESCRIPTOR: HS1348-1

LIBRARY
LIBRARY_NAME: TOTAL-hEScd2-2
LIBRARY_STRATEGY: ChIP-Seq
LIBRARY_SOURCE: GENOMIC
LIBRARY_SELECTION: RANDOM
LIBRARY_LAYOUT: SINGLE
LIBRARY_CONSTRUCTION_PROTOCOL: NA

SPOT
SPOT_DECODE_SPEC: 1 0 Application Read Forward 1

PLATFORM
ILLUMINA
INSTRUMENT_MODEL: Illumina Genome Analyzer II
CYCLE_SEQUENCE: ACGT
CYCLE_COUNT: 76

BASE CALLS
SEQUENCE_SPACE: Base Space
BASE_CALLER: Bustard 1.3.2

QUALITY SCORES
Quality Type: phred
QUALITY_SCORER: Illumina Pipeline 1.32
NUMBER_OF_LEVELS: 80
MULTIPLIER: 1

ATTRIBUTES
EXPERIMENT_TYPE: ChIP-Seq Input
EXTRACTION_PROTOCOL: NA
EXTRACTION_PROTOCOL_TYPE_OF_SONICATOR: Bioruptor
EXTRACTION_PROTOCOL_SONICATION_CYCLES: 25 min
CHIP_PROTOCOL: Input
CHIP_PROTOCOL_CHROMATIN_AMOUNT: 35.3 ug

 

 


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