expected_number_runs: 1
expected_number_reads: 20376203
expected_number_spots: 20376203
center_name: BCCAGSC
alias: HS1413-1_42ENEAAXX

STUDY_REF: UCSF_UBC_HREMP
SAMPLE_DESCRIPTOR: HS1413-1

LIBRARY
LIBRARY_NAME: H1EScd1-me1K4-D
LIBRARY_STRATEGY: ChIP-Seq
LIBRARY_SOURCE: GENOMIC
LIBRARY_SELECTION: ChIP
LIBRARY_LAYOUT: SINGLE
LIBRARY_CONSTRUCTION_PROTOCOL: NA

SPOT
SPOT_DECODE_SPEC: 1 0 Application Read Forward 1

PLATFORM
ILLUMINA
INSTRUMENT_MODEL: Illumina Genome Analyzer II
CYCLE_SEQUENCE: ACGT
CYCLE_COUNT: 76

BASE CALLS
SEQUENCE_SPACE: Base Space
BASE_CALLER: Bustard 1.4.0

QUALITY SCORES
Quality Type: phred
QUALITY_SCORER: Illumina Pipeline 1.4
NUMBER_OF_LEVELS: 80
MULTIPLIER: 1

ATTRIBUTES
EXPERIMENT_TYPE: Histone H3K4me1
EXTRACTION_PROTOCOL: NA
EXTRACTION_PROTOCOL_TYPE_OF_SONICATOR: Bioruptor
EXTRACTION_PROTOCOL_SONICATION_CYCLES: 25 min
CHIP_PROTOCOL: NA
CHIP_PROTOCOL_CHROMATIN_AMOUNT: 35.3 ug
CHIP_PROTOCOL_BEAD_TYPE: Protein G Mag Beads
CHIP_PROTOCOL_BEAD_AMOUNT: 30 ul
CHIP_PROTOCOL_ANTIBODY_AMOUNT: NA
CHIP_ANTIBODY: H3K4me1
CHIP_ANTIBODY_PROVIDER: Abcam
CHIP_ANTIBODY_CATALOG: ab8895
CHIP_ANTIBODY_LOT: 535659