expected_number_runs: 1
expected_number_reads: 13211769
expected_number_spots: 13211769
center_name: BCCAGSC
alias: HS1345-1_305H8AAXX

STUDY_REF: UCSF_UBC_HREMP
SAMPLE_DESCRIPTOR: HS1345-1

LIBRARY
LIBRARY_NAME: H1EScd2-me3K4-C
LIBRARY_STRATEGY: ChIP-Seq
LIBRARY_SOURCE: GENOMIC
LIBRARY_SELECTION: ChIP
LIBRARY_LAYOUT: SINGLE
LIBRARY_CONSTRUCTION_PROTOCOL: Farnham lab protocol

SPOT
SPOT_DECODE_SPEC: 1 0 Application Read Forward 1

PLATFORM
ILLUMINA
INSTRUMENT_MODEL: Illumina Genome Analyzer II
CYCLE_SEQUENCE: ACGT
CYCLE_COUNT: 76

BASE CALLS
SEQUENCE_SPACE: Base Space
BASE_CALLER: Bustard 1.3.2

QUALITY SCORES
Quality Type: phred
QUALITY_SCORER: Illumina Pipeline 1.32
NUMBER_OF_LEVELS: 80
MULTIPLIER: 1

ATTRIBUTES
EXPERIMENT_TYPE: Histone H3K4me3
EXTRACTION_PROTOCOL: NA
EXTRACTION_PROTOCOL_TYPE_OF_SONICATOR: Bioruptor
EXTRACTION_PROTOCOL_SONICATION_CYCLES: 25 min
CHIP_PROTOCOL: NA
CHIP_PROTOCOL_CHROMATIN_AMOUNT: 7.06 ug
CHIP_PROTOCOL_BEAD_TYPE: Protein G Mag Beads
CHIP_PROTOCOL_BEAD_AMOUNT: 15 ul
CHIP_PROTOCOL_ANTIBODY_AMOUNT: NA
CHIP_ANTIBODY: H3K4me3
CHIP_ANTIBODY_PROVIDER: Cell Signaling Technology
CHIP_ANTIBODY_CATALOG: 9751
CHIP_ANTIBODY_LOT: 2