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Reference Epigenome: ChIP-Seq Analysis of H4K8ac in Neural Progenitor Cells
ChIP-Seq Analysis of H4K8ac in Neural Progenitor Cells. Sequencing was done on the Illumina HiSeq 2000 platform.
Project News:
2011/10/10: EXPERIMENT XML file 'renlab.H4K8ac.NPC.01.01.experiment.xml' uploaded
alias: renlab.H4K8ac.NPC.01.01
expected_number_runs: 1 center_name: UCSD STUDY_REF: The San Diego Epigenome Center SAMPLE_DESCRIPTOR: NPC-05 LIBRARY LIBRARY_NAME: AK265 LIBRARY_STRATEGY: ChIP-Seq LIBRARY_SOURCE: GENOMIC LIBRARY_SELECTION: ChIP LIBRARY_LAYOUT: SINGLE POOLING_STRATEGY: none LIBRARY_CONSTRUCTION_PROTOCOL: See http://bioinformatics-renlab.ucsd.edu/RenLabLibraryProtocolV1.pdf SPOT NUMBER_OF_READS_PER_SPOT: READ_INDEX: 0 READ_CLASS: Application Read READ_TYPE: Forward BASE_COORD: 1 PLATFORM ILLUMINA INSTRUMENT_MODEL: Illumina HiSeq 2000 SEQUENCE_LENGTH: 36 BASE CALLS Illumina HiSeq Control Software 1.4.5 QUALITY SCORES Illumina HiSeq Control Software 1.4.5 ATTRIBUTES EXPERIMENT_TYPE: Histone H4K8ac EXTRACTION_PROTOCOL: See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf EXTRACTION_PROTOCOL_TYPE_OF_SONICATOR: Biorupter EXTRACTION_PROTOCOL_SONICATION_CYCLES: 80 CHIP_PROTOCOL: See http://bioinformatics-renlab.ucsd.edu/RenLabChipProtocolV1.pdf CHIP_PROTOCOL_CHROMATIN_AMOUNT: 500 micrograms CHIP_PROTOCOL_BEAD_TYPE: magnetic anti-rabbit CHIP_PROTOCOL_BEAD_AMOUNT: 33,500,000 CHIP_PROTOCOL_ANTIBODY_AMOUNT: 5 micrograms CHIP_ANTIBODY: H4K8ac CHIP_ANTIBODY_PROVIDER: Millipore CHIP_ANTIBODY_CATALOG: 07-328 CHIP_ANTIBODY_LOT: DAM1543700 |
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