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Raw Signal Density Graphs of Fetal Brain smRNA-Seq Data
Illumina smRNA-Seq read mappings from Fetal Brain, Donor HuFNSC01 were processed into density graphs of raw signal representing the aligned read density. If a read maps to more than one location, the density of that read at a specific location is calculated as 1/(number of mappings).
Project News:
2011/8/30:
ANALYSIS XML file 'ucsf-ubc.smrna-seq.level.2.xml' uploaded
alias: M01581-1.hg19.level.2.release.4
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Fetal_Brain.smRNA-Seq.HuFNSC01.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: smRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: FB smRNA 01
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Fetal Brain smRNA-Seq Donor HuFNSC01 Library M01581-1 EA Release 4
NUMBER_OF_MAPPED_READS: 7,156,714
PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA: 89.53
PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA_PERCENTILE: 80
MAXIMUM_REPLICATE_CORRELATION: 0.996
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.Fetal_Brain.smRNA-Seq.HuFNSC01.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: smRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: FB smRNA 01
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Fetal Brain smRNA-Seq Donor HuFNSC01 Library M01581-1 EA Release 4
NUMBER_OF_MAPPED_READS: 7,156,714
PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA: 89.53
PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA_PERCENTILE: 80
MAXIMUM_REPLICATE_CORRELATION: 0.996
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