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Raw Signal Density Graphs of Peripheral Blood Mononuclear Primary Cells smRNA-Seq Data
Illumina smRNA-Seq read mappings from Peripheral Blood Mononuclear Primary Cells, Donor TC014 were processed into density graphs of raw signal representing the aligned read density. If a read maps to more than one location, the density of that read at a specific location is calculated as 1/(number of mappings).
Project News:
2011/8/30: ANALYSIS XML file 'ucsf-ubc.smrna-seq.level.2.xml' uploaded
alias: M00734-1.hg19.level.2.release.4
Analysis Center: EDACC Analysis File Type: .wig Analysis File Name: UCSF-UBC.Peripheral_Blood_Mononuclear_Primary_Cells.smRNA-Seq.TC014.wig DATA_ANALYSIS_LEVEL: 2 EXPERIMENT_TYPE: smRNA-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: In house programs and scripts SOFTWARE_VERSION: NA READ_EXTENSION: 0bp GENOMIC_WINDOW: 20bp TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None RELEASE_NUMBER: Human Epigenome Atlas 4 BROWSER_TRACK_NAME: PBM smRNA 14 BROWSER_TRACK_DESCRIPTION: UCSF-UBC-USC Peripheral Blood Mononuclear Primary Cells smRNA-Seq Donor TC014 Library M00734-1 EA Release 4 NUMBER_OF_MAPPED_READS: 1,330,677 PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA: 49.06 PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA_PERCENTILE: 13 MAXIMUM_REPLICATE_CORRELATION: NA |
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