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Mapping of Peripheral Blood Mononuclear Primary Cells smRNA-Seq Data
Illumina reads produced by smRNA-Seq on Peripheral Blood Mononuclear Primary Cells, Donor TC014 were mapped to the human genome using Pash.
Project News:
2011/8/30: ANALYSIS XML file 'ucsf-ubc.smrna-seq.level.1.xml' uploaded
alias: M00734-1.hg19.level.1.release4
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UCSF-UBC.Peripheral_Blood_Mononuclear_Primary_Cells.smRNA-Seq.TC014.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: smRNA-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 100 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 100 positions it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None ALIGNMENT_POSTPROCESSING: None RELEASE_NUMBER: Human Epigenome Atlas 4 NUMBER_OF_MAPPED_READS: 1,330,677 PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA: 49.06 PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA_PERCENTILE: 13 MAXIMUM_REPLICATE_CORRELATION: NA |
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