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Raw Signal Density Graphs of iPS DF 6.9 Cell Line mRNA-Seq Data
SOLiD mRNA-Seq read mappings from the iPS DF 6.9 Cell Line, Library mRNA-Seq_ff_ips_6_9_r1 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/8/9:
ANALYSIS XML file 'ucsd.mrna-seq.level.2.xml' uploaded
alias: mRNA-Seq_ff_ips_6_9_r1.hg19.level.2.release.4
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.iPS_DF_6.9.mRNA-Seq.mRNA-Seq_ff_ips_6_9_r1.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: mRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: iD6.9 mRNA r1
BROWSER_TRACK_DESCRIPTION: UCSD iPS DF 6.9 Cell Line mRNA-Seq Library mRNA-Seq_ff_ips_6_9_r1 EA Release 4
NUMBER_OF_MAPPED_READS: 15,319,378
NUMBER_OF_MRNA-SEQ_EXPERIMENTS_SCORED: 8
PERCENT_READS_MAPPING_TO_UCSC_GENES: 89.84
PERCENT_READS_MAPPING_TO_UCSC_GENES_PERCENTILE: 38
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.iPS_DF_6.9.mRNA-Seq.mRNA-Seq_ff_ips_6_9_r1.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: mRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: iD6.9 mRNA r1
BROWSER_TRACK_DESCRIPTION: UCSD iPS DF 6.9 Cell Line mRNA-Seq Library mRNA-Seq_ff_ips_6_9_r1 EA Release 4
NUMBER_OF_MAPPED_READS: 15,319,378
NUMBER_OF_MRNA-SEQ_EXPERIMENTS_SCORED: 8
PERCENT_READS_MAPPING_TO_UCSC_GENES: 89.84
PERCENT_READS_MAPPING_TO_UCSC_GENES_PERCENTILE: 38
MAXIMUM_REPLICATE_CORRELATION: NA
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