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Mapping of H1-BMP4 Cell Line mRNA-Seq Data
SOLiD reads produced by mRNA-Seq on the H1-BMP4 Cell Line, Library mRNA-Seq_h1+bmp4_r2 were mapped to the human genome using Pash.
Project News:
2011/8/9:
ANALYSIS XML file 'ucsd.mrna-seq.level.1.xml' uploaded
alias: mRNA-Seq_h1+bmp4_r2.hg19.level.1.release.4
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSD.H1-BMP4.mRNA-Seq.mRNA-Seq_h1+bmp4_r2.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: mRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 4
NUMBER_OF_MAPPED_READS: 14,984,957
NUMBER_OF_MRNA-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 8
PERCENT_READS_MAPPING_TO_UCSC_GENES: 93.34
PERCENT_READS_MAPPING_TO_UCSC_GENES_PERCENTILE: 88
MAXIMUM_REPLICATE_CORRELATION: 0.72
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSD.H1-BMP4.mRNA-Seq.mRNA-Seq_h1+bmp4_r2.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: mRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 4
NUMBER_OF_MAPPED_READS: 14,984,957
NUMBER_OF_MRNA-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 8
PERCENT_READS_MAPPING_TO_UCSC_GENES: 93.34
PERCENT_READS_MAPPING_TO_UCSC_GENES_PERCENTILE: 88
MAXIMUM_REPLICATE_CORRELATION: 0.72
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