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Methylation Proportion Graphs of Fetal Lung RRBS Data
Illumina RRBS read mappings from Fetal Lung, Donor H-23266 were processed into graphs of methylation proportions. Methylation proportions were calculated as (methylated calls / (methylated calls + unmethylated calls)) for all CpGs covered by at least 4 reads.
Project News:
2011/7/28:
ANALYSIS XML file 'bi.rrbs.level.2.xml' uploaded
alias: RRBS1224.hg19.level.2.release.4
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Fetal_Lung.RRBS.H-23266.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Reduced Representation Bisulfite-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 MspI restriction fragments 40-220bp
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
GENOMIC_WINDOW: 2bp containing CpGs
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: FL RRBS 66 24
BROWSER_TRACK_DESCRIPTION: BI Fetal Lung RRBS Donor H-23266 Library RRBS1224 EA Release 4
NUMBER_OF_MAPPED_READS: 21,939,176
NUMBER_OF_RRBS_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 21
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 99.56
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS_PERCENTILE: 52
MAXIMUM_REPLICATE_CORRELATION: 0.76
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Fetal_Lung.RRBS.H-23266.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Reduced Representation Bisulfite-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 MspI restriction fragments 40-220bp
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
GENOMIC_WINDOW: 2bp containing CpGs
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: FL RRBS 66 24
BROWSER_TRACK_DESCRIPTION: BI Fetal Lung RRBS Donor H-23266 Library RRBS1224 EA Release 4
NUMBER_OF_MAPPED_READS: 21,939,176
NUMBER_OF_RRBS_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 21
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 99.56
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS_PERCENTILE: 52
MAXIMUM_REPLICATE_CORRELATION: 0.76
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