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Raw Signal Density Graphs of H9 Cell Line Histone H3K56ac ChIP-Seq Data
Illumina Histone H3K56ac ChIP-Seq read mappings from the H9 Cell Line, Library SK279 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/7/27:
ANALYSIS XML file 'ucsd-chip-seq.level.2.xml' uploaded
alias: renlab.H3K56ac.hESC.H9.02.01.hg19.level.2.release.4
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H9.H3K56ac.SK279.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: H9 H3K56ac 79
BROWSER_TRACK_DESCRIPTION: UCSD H9 Cell Line Histone H3K56ac Library SK279 EA Release 4
NUMBER_OF_MAPPED_READS: 16,046,009
NUMBER_OF_H3K56ac_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 1
FINDPEAKS_SCORE: 0.0244
FINDPEAKS_PERCENTILE: 100
HOTSPOT_SCORE: 0.1777
HOTSPOT_PERCENTILE: 100
IROC_SCORE: 0.7202
IROC_PERCENTILE: 100
POISSON_SCORE: 0.3316
POISSON_PERCENTILE: 100
MAXIMUM_REPLICATE_CORRELATION: 0.92
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H9.H3K56ac.SK279.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: H9 H3K56ac 79
BROWSER_TRACK_DESCRIPTION: UCSD H9 Cell Line Histone H3K56ac Library SK279 EA Release 4
NUMBER_OF_MAPPED_READS: 16,046,009
NUMBER_OF_H3K56ac_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 1
FINDPEAKS_SCORE: 0.0244
FINDPEAKS_PERCENTILE: 100
HOTSPOT_SCORE: 0.1777
HOTSPOT_PERCENTILE: 100
IROC_SCORE: 0.7202
IROC_PERCENTILE: 100
POISSON_SCORE: 0.3316
POISSON_PERCENTILE: 100
MAXIMUM_REPLICATE_CORRELATION: 0.92
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