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Raw Signal Density Graphs of iPS DF 19.11 Cell Line Histone H3K4me3 ChIP-Seq Data
Illumina Histone H3K4me3 ChIP-Seq read mappings from the iPS DF 19.11 Cell Line, Library SK227 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/7/27:
ANALYSIS XML file 'ucsd-chip-seq.level.2.xml' uploaded
alias: renlab.H3K4me3.iPS-19.11_01.01.hg19.level.2.release.4
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.iPS_DF_19.11.H3K4me3.SK227.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: iD19.11 H3K4me3 27
BROWSER_TRACK_DESCRIPTION: UCSD iPS DF 19.11 Cell Line Histone H3K4me3 Library SK227 EA Release 4
NUMBER_OF_MAPPED_READS: 17,542,802
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 8
FINDPEAKS_SCORE: 0.5844
FINDPEAKS_PERCENTILE: 63
HOTSPOT_SCORE: 0.5843
HOTSPOT_PERCENTILE: 63
IROC_SCORE: 1.0
IROC_PERCENTILE: 100
POISSON_SCORE: 0.5731
POISSON_PERCENTILE: 50
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.iPS_DF_19.11.H3K4me3.SK227.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: iD19.11 H3K4me3 27
BROWSER_TRACK_DESCRIPTION: UCSD iPS DF 19.11 Cell Line Histone H3K4me3 Library SK227 EA Release 4
NUMBER_OF_MAPPED_READS: 17,542,802
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 8
FINDPEAKS_SCORE: 0.5844
FINDPEAKS_PERCENTILE: 63
HOTSPOT_SCORE: 0.5843
HOTSPOT_PERCENTILE: 63
IROC_SCORE: 1.0
IROC_PERCENTILE: 100
POISSON_SCORE: 0.5731
POISSON_PERCENTILE: 50
MAXIMUM_REPLICATE_CORRELATION: NA
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