|
|||||||||
Mapping of iPS DF 6.9 Cell Line ChIP-Seq Input Data
Illumina reads produced by ChIP-Seq Input on the iPS DF 6.9 Cell Line, Library SKiPS6.9-1 were mapped to the human genome using Pash.
Project News:
2011/7/27: ANALYSIS XML file 'ucsd-chip-seq.level.1.xml' uploaded
alias: renlab.Input.iPS-6.9_01.01.hg19.level.1.release.4
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UCSD.iPS_DF_6.9.Input.SKiPS6.9-1.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 1 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. ALIGNMENT_POSTPROCESSING: None READ_EXTENSION: 200bp RELEASE_NUMBER: Human Epigenome Atlas 4 NUMBER_OF_MAPPED_READS: 13,724,896 NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 14 FINDPEAKS_SCORE: 0.0453 FINDPEAKS_PERCENTILE: 100 HOTSPOT_SCORE: 0.1863 HOTSPOT_PERCENTILE: 100 IROC_SCORE: 0.7954 IROC_PERCENTILE: 100 POISSON_SCORE: 0.3004 POISSON_PERCENTILE: 100 MAXIMUM_REPLICATE_CORRELATION: NA |
|||||||||
|
|||||||||