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Raw Signal Density Graphs of Fetal Brain Histone H3K4me1 ChIP-Seq Data
Illumina Histone H3K4me1 ChIP-Seq read mappings from Fetal Brain, Donor UW H22676 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/7/27:
ANALYSIS XML file 'bi.chip-seq.level.2.xml' uploaded
alias: DNA_Lib 384.hg19.level.2.release.4
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Fetal_Brain.H3K4me1.UW_H22676.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: FB H3K4me1 76 84
BROWSER_TRACK_DESCRIPTION: BI Fetal Brain Histone H3K4me1 Donor UW H22676 Library DNA_Lib 384 EA Release 4
NUMBER_OF_MAPPED_READS: 16,695,767
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 12
FINDPEAKS_SCORE: 0.4201
FINDPEAKS_PERCENTILE: 69
HOTSPOT_SCORE: 0.4809
HOTSPOT_PERCENTILE: 69
IROC_SCORE: 0.9899
IROC_PERCENTILE: 58
POISSON_SCORE: 0.5718
POISSON_PERCENTILE: 54
MAXIMUM_REPLICATE_CORRELATION: NA
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Fetal_Brain.H3K4me1.UW_H22676.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: FB H3K4me1 76 84
BROWSER_TRACK_DESCRIPTION: BI Fetal Brain Histone H3K4me1 Donor UW H22676 Library DNA_Lib 384 EA Release 4
NUMBER_OF_MAPPED_READS: 16,695,767
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 12
FINDPEAKS_SCORE: 0.4201
FINDPEAKS_PERCENTILE: 69
HOTSPOT_SCORE: 0.4809
HOTSPOT_PERCENTILE: 69
IROC_SCORE: 0.9899
IROC_PERCENTILE: 58
POISSON_SCORE: 0.5718
POISSON_PERCENTILE: 54
MAXIMUM_REPLICATE_CORRELATION: NA
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