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Mapping of Mobilized CD34 Primary Cells ChIP-Seq Input Data
Illumina reads produced by ChIP-Seq Input on Mobilized CD34 Primary Cells, Donor RO 01480 were mapped to the human genome using Pash.
Project News:
2011/7/27: ANALYSIS XML file 'bi.chip-seq.level.1.xml' uploaded
alias: DNA_Lib 252.hg19.level.1.release.4
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: BI.Mobilized_CD34_Primary_Cells.Input.RO_01480.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 1 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. ALIGNMENT_POSTPROCESSING: None READ_EXTENSION: 200bp RELEASE_NUMBER: Human Epigenome Atlas 4 NUMBER_OF_MAPPED_READS: 60,056,459 NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 14 FINDPEAKS_SCORE: 0.0057 FINDPEAKS_PERCENTILE: 42 HOTSPOT_SCORE: 0.0032 HOTSPOT_PERCENTILE: 17 IROC_SCORE: 1.0 IROC_PERCENTILE: 100 POISSON_SCORE: 0.0164 POISSON_PERCENTILE: 17 MAXIMUM_REPLICATE_CORRELATION: 0.97 |
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