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Mapping of Neurosphere Cultured Cells Cortex Derived Histone H3K4me1 ChIP-Seq Data
Illumina reads produced by Histone H3K4me1 ChIP-Seq on Neurosphere Cultured Cells Cortex Derived, Donor HuFNSC02 were mapped to the human genome using Pash.
Project News:
2011/7/27: ANALYSIS XML file 'ucsf-ubc.chip-seq.level.1.xml' uploaded
alias: A03281-1.hg19.level.1.release.4
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UCSF-UBC.Neurosphere_Cultured_Cells_Cortex_Derived.H3K4me1.HuFNSC02.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 1 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. ALIGNMENT_POSTPROCESSING: None READ_EXTENSION: 200bp RELEASE_NUMBER: Human Epigenome Atlas 4 NUMBER_OF_MAPPED_READS: 37,400,073 NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 12 FINDPEAKS_SCORE: 0.2516 FINDPEAKS_PERCENTILE: 38 HOTSPOT_SCORE: 0.3154 HOTSPOT_PERCENTILE: 38 IROC_SCORE: 0.9789 IROC_PERCENTILE: 42 POISSON_SCORE: 0.4449 POISSON_PERCENTILE: 38 MAXIMUM_REPLICATE_CORRELATION: NA |
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