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Mapping of Fetal Intestine Large Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on Fetal Intestine Large, Donor H-23769, Library DS17313 were mapped to the human genome using Pash.


Project News:
2011/6/22:
ANALYSIS XML file 'uw.chromatin.accessibility.level.1.release.4.xml' uploaded



alias: DS17313.hg19.level.1.release.4
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Intestine_Large.ChromatinAccessibility.H-23769.DS17313.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 4
NUMBER_OF_MAPPED_READS: 28,629,835
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.3897
FINDPEAKS_PERCENTILE: 54
HOTSPOT_SCORE: 0.3869
HOTSPOT_PERCENTILE: 54
IROC_SCORE: 0.9973
IROC_PERCENTILE: 93
POISSON_SCORE: 0.4345
POISSON_PERCENTILE: 52
MAXIMUM_REPLICATE_CORRELATION: 0.96

 

 


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