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Mapping of Fetal Thymus Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on Fetal Thymus, Donor H-23964, Library DS17875 were mapped to the human genome using Pash.
Project News:
2011/6/22:
ANALYSIS XML file 'uw.chromatin.accessibility.level.1.release.4.xml' uploaded
alias: DS17875.hg19.level.1.release.4
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Thymus.ChromatinAccessibility.H-23964.DS17875.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 4
NUMBER_OF_MAPPED_READS: 30,577,108
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.2815
FINDPEAKS_PERCENTILE: 17
HOTSPOT_SCORE: 0.2823
HOTSPOT_PERCENTILE: 17
IROC_SCORE: 0.9969
IROC_PERCENTILE: 85
POISSON_SCORE: 0.318
POISSON_PERCENTILE: 7
MAXIMUM_REPLICATE_CORRELATION: 0.96
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Thymus.ChromatinAccessibility.H-23964.DS17875.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 1
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 4
NUMBER_OF_MAPPED_READS: 30,577,108
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54
FINDPEAKS_SCORE: 0.2815
FINDPEAKS_PERCENTILE: 17
HOTSPOT_SCORE: 0.2823
HOTSPOT_PERCENTILE: 17
IROC_SCORE: 0.9969
IROC_PERCENTILE: 85
POISSON_SCORE: 0.318
POISSON_PERCENTILE: 7
MAXIMUM_REPLICATE_CORRELATION: 0.96
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