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Mapping of Fetal Renal Cortex Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on Fetal Renal Cortex, Donor H-23790, Library DS17387 were mapped to the human genome using Pash.
Project News:
2011/6/22: ANALYSIS XML file 'uw.chromatin.accessibility.level.1.release.4.xml' uploaded
alias: DS17387.hg19.level.1.release.4
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UW.Fetal_Renal_Cortex.ChromatinAccessibility.H-23790.DS17387.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: Chromatin Accessibility GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 1 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 1 position it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None ALIGNMENT_POSTPROCESSING: None RELEASE_NUMBER: Human Epigenome Atlas 4 NUMBER_OF_MAPPED_READS: 27,523,931 NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 54 FINDPEAKS_SCORE: 0.5648 FINDPEAKS_PERCENTILE: 93 HOTSPOT_SCORE: 0.5543 HOTSPOT_PERCENTILE: 93 IROC_SCORE: 0.9952 IROC_PERCENTILE: 61 POISSON_SCORE: 0.595 POISSON_PERCENTILE: 98 MAXIMUM_REPLICATE_CORRELATION: 0.98 |
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