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Methylation Proportion Graphs of iPS DF 19.11 Cell Line Bisulfite-Seq Data
Illumina Bisulfite-Seq read mappings from the iPS DF 19.11 Cell Line combined libraries were processed into graphs of methylation proportions. Methylation proportions were calculated as (methylated calls / (methylated calls + unmethylated calls)) for all CpGs covered by at least 4 reads. Reads from the + and - strands were combined for methylation proportion calculations.
Project News:
2011/6/20:
ANALYSIS XML file 'ucsd.bisulfite-seq.level.2.xml' uploaded
alias: methylC-seq_ff_ips_19_11_r1a-methylC-seq_ff_ips_19_11_r1b-methylC-seq_ff_ips_19_11_r2a-methylC-seq_ff_ips_19_11_r2b.hg19.level.2.release.4
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.iPS_DF_19.11.Bisulfite-Seq.combined.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Bisulfite-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 2bp containing CpGs
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: iD19.11 BS Combined
BROWSER_TRACK_DESCRIPTION: UCSD iPS DF 19.11 Cell Line Bisulfite-Seq Combined Libraries EA Release 4
NUMBER_OF_MAPPED_READS: 1,347,396,659
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 97.24
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.iPS_DF_19.11.Bisulfite-Seq.combined.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Bisulfite-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 2bp containing CpGs
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 4
BROWSER_TRACK_NAME: iD19.11 BS Combined
BROWSER_TRACK_DESCRIPTION: UCSD iPS DF 19.11 Cell Line Bisulfite-Seq Combined Libraries EA Release 4
NUMBER_OF_MAPPED_READS: 1,347,396,659
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 97.24
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