Genboree BCM
Help Genboree Home
(This is a recently added feature. Report issues to Genboree Admin.)
Methylation Proportion Graphs of Primary Fibroblast Cell Line RRBS Data
Illumina RRBS read mappings from the Primary Fibroblast Cell Line, Libraries RRBS530-531 were processed into graphs of methylation proportions. Methylation proportions were calculated as (methylated calls / (methylated calls + unmethylated calls)) for all CpGs covered by at least 4 reads.


Project News:
2011/3/22:
ANALYSIS XML file 'bi.rrbs.level.2.release3.xml' uploaded



alias: RRBS530-RRBS531.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Primary_Fibroblast.RRBS.RRBS530-531.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Reduced Representation Bisulfite-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 MspI restriction fragments 40-220bp
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
GENOMIC_WINDOW: 2bp containing CpGs
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 3
BROWSER_TRACK_NAME: PF RRBS 30
BROWSER_TRACK_DESCRIPTION: BI Primary Fibroblast Cell Line RRBS Libraries RRBS530-531 EA Release 3
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 99.16

 

 


Bioinformatics Research Laboratory © 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030)