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Raw Signal Density Graphs of Rectal Mucosa Histone H3K4me1 ChIP-Seq Data
Illumina Histone H3K4me1 ChIP-Seq read mappings from Rectal Mucosa, Donor 30 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/3/18:
ANALYSIS XML file 'bi.chip-seq.level.2.release.3.xml' uploaded
alias: Lib:XZ:20100827:10--ChIP:XZ:20100824:10:rectal smooth muscle:H3K4Me1-Lib:XZ:20100423:26--ChIP:XZ:70100407:15:rectal mucosa:H3K4Me1.hg19.level.2.release.3
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Rectal_Mucosa.H3K4me1.30.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 3
BROWSER_TRACK_NAME: RM H3K4me1 30
BROWSER_TRACK_DESCRIPTION: BI Rectal Mucosa Histone H3K4me1 Donor 30 Library Lib:XZ:20100827:10--ChIP:XZ:20100824:10:rectal smooth muscle:H3K4Me1 EA Release 3
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 50
FINDPEAKS_SCORE: 0.1086
FINDPEAKS_PERCENTILE: 18
HOTSPOT_SCORE: 0.2008
HOTSPOT_PERCENTILE: 11
IROC_SCORE: 0.935
IROC_PERCENTILE: 29
POISSON_SCORE: 0.3341
POISSON_PERCENTILE: 7
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Rectal_Mucosa.H3K4me1.30.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 3
BROWSER_TRACK_NAME: RM H3K4me1 30
BROWSER_TRACK_DESCRIPTION: BI Rectal Mucosa Histone H3K4me1 Donor 30 Library Lib:XZ:20100827:10--ChIP:XZ:20100824:10:rectal smooth muscle:H3K4Me1 EA Release 3
NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 50
FINDPEAKS_SCORE: 0.1086
FINDPEAKS_PERCENTILE: 18
HOTSPOT_SCORE: 0.2008
HOTSPOT_PERCENTILE: 11
IROC_SCORE: 0.935
IROC_PERCENTILE: 29
POISSON_SCORE: 0.3341
POISSON_PERCENTILE: 7
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