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Raw Signal Density Graphs of Brain Anterior Caudate Histone H3K4me3 ChIP-Seq Data
Illumina Histone H3K4me3 ChIP-Seq read mappings from Brain Anterior Caudate, Donor 112 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/3/18:
ANALYSIS XML file 'bi.chip-seq.level.2.release.3.xml' uploaded
alias: Lib:XZ:20100921:16--ChIP:XZ:20100914:16:anterior caudate :H3K4Me3.hg19.level.2.release.3
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Brain_Anterior_Caudate.H3K4me3.112.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 3
BROWSER_TRACK_NAME: BAC H3K4me3 12
BROWSER_TRACK_DESCRIPTION: BI Brain Anterior Caudate Histone H3K4me3 Donor 112 Library Lib:XZ:20100921:16--ChIP:XZ:20100914:16:anterior caudate :H3K4Me3 EA Release 3
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 63
FINDPEAKS_SCORE: 0.2131
FINDPEAKS_PERCENTILE: 28
HOTSPOT_SCORE: 0.2409
HOTSPOT_PERCENTILE: 28
IROC_SCORE: 0.9997
IROC_PERCENTILE: 76
POISSON_SCORE: 0.2842
POISSON_PERCENTILE: 32
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Brain_Anterior_Caudate.H3K4me3.112.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 3
BROWSER_TRACK_NAME: BAC H3K4me3 12
BROWSER_TRACK_DESCRIPTION: BI Brain Anterior Caudate Histone H3K4me3 Donor 112 Library Lib:XZ:20100921:16--ChIP:XZ:20100914:16:anterior caudate :H3K4Me3 EA Release 3
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 63
FINDPEAKS_SCORE: 0.2131
FINDPEAKS_PERCENTILE: 28
HOTSPOT_SCORE: 0.2409
HOTSPOT_PERCENTILE: 28
IROC_SCORE: 0.9997
IROC_PERCENTILE: 76
POISSON_SCORE: 0.2842
POISSON_PERCENTILE: 32
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