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Raw Signal Density Graphs of Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells, Donor 60 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/3/18: ANALYSIS XML file 'bi.chip-seq.level.2.release.3.xml' uploaded
alias: Lib:MC:20100713:14--ChIP:MC:20100706:14:BM-MSC:WCE.hg19.level.2.release.3
Analysis Center: EDACC Analysis File Type: .wig Analysis File Name: BI.Bone_Marrow_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.Input.60.wig DATA_ANALYSIS_LEVEL: 2 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: In house programs and scripts SOFTWARE_VERSION: NA READ_EXTENSION: 200bp TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. GENOMIC_WINDOW: 20bp TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None RELEASE_NUMBER: Human Epigenome Atlas 3 BROWSER_TRACK_NAME: BMDMSC Input 60 BROWSER_TRACK_DESCRIPTION: BI Bone Marrow Derived Mesenchymal Stem Cell Cultured Cells ChIP-Seq Input Donor 60 Library Lib:MC:20100713:14--ChIP:MC:20100706:14:BM-MSC:WCE EA Release 3 NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 61 FINDPEAKS_SCORE: 0.0059 FINDPEAKS_PERCENTILE: 23 HOTSPOT_SCORE: 0.0098 HOTSPOT_PERCENTILE: 43 IROC_SCORE: 1.0 IROC_PERCENTILE: 100 POISSON_SCORE: 0.0535 POISSON_PERCENTILE: 50 |
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