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Raw Signal Density Graphs of Brain Substantia Nigra Histone H3K4me3 ChIP-Seq Data
Illumina Histone H3K4me3 ChIP-Seq read mappings from Brain Substantia Nigra, Donor 112 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/3/18:
ANALYSIS XML file 'bi.chip-seq.level.2.release.3.xml' uploaded
alias: Lib:XZ:20100921:02--ChIP:XZ:20100914:02:substantia nigra:H3K4Me3.hg19.level.2.release.3
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Brain_Substantia_Nigra.H3K4me3.112.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 3
BROWSER_TRACK_NAME: BSN H3K4me3 12
BROWSER_TRACK_DESCRIPTION: BI Brain Substantia Nigra Histone H3K4me3 Donor 112 Library Lib:XZ:20100921:02--ChIP:XZ:20100914:02:substantia nigra:H3K4Me3 EA Release 3
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 63
FINDPEAKS_SCORE: 0.1289
FINDPEAKS_PERCENTILE: 12
HOTSPOT_SCORE: 0.1703
HOTSPOT_PERCENTILE: 8
IROC_SCORE: 0.9984
IROC_PERCENTILE: 52
POISSON_SCORE: 0.2145
POISSON_PERCENTILE: 8
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.Brain_Substantia_Nigra.H3K4me3.112.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 200bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 3
BROWSER_TRACK_NAME: BSN H3K4me3 12
BROWSER_TRACK_DESCRIPTION: BI Brain Substantia Nigra Histone H3K4me3 Donor 112 Library Lib:XZ:20100921:02--ChIP:XZ:20100914:02:substantia nigra:H3K4Me3 EA Release 3
NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 63
FINDPEAKS_SCORE: 0.1289
FINDPEAKS_PERCENTILE: 12
HOTSPOT_SCORE: 0.1703
HOTSPOT_PERCENTILE: 8
IROC_SCORE: 0.9984
IROC_PERCENTILE: 52
POISSON_SCORE: 0.2145
POISSON_PERCENTILE: 8
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