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Raw Signal Density Graphs of H1 Cell Line ChIP-Seq Input Data
Illumina ChIP-Seq Input read mappings from the H1 Cell Line, Library AK57 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2011/3/18: ANALYSIS XML file 'ucsd.chip-seq.level.2.release.3.xml' uploaded
alias: renlab.Input.hESC.H1.09.01.hg19.level.2.release.3
Analysis Center: EDACC Analysis File Type: .wig Analysis File Name: UCSD.H1.Input.AK57.wig DATA_ANALYSIS_LEVEL: 2 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: In house programs and scripts SOFTWARE_VERSION: NA READ_EXTENSION: 200bp TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. GENOMIC_WINDOW: 20bp TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None RELEASE_NUMBER: Human Epigenome Atlas 3 BROWSER_TRACK_NAME: H1 Input 57 01 BROWSER_TRACK_DESCRIPTION: UCSD H1 Cell Line ChIP-Seq Input Library AK57 EA Release 2 NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 30 FINDPEAKS_SCORE: 0.0078 FINDPEAKS_PERCENTILE: 83 HOTSPOT_SCORE: 0.0846 HOTSPOT_PERCENTILE: 93 IROC_SCORE: 0.0 IROC_PERCENTILE: NA POISSON_SCORE: 0.1786 POISSON_PERCENTILE: 93 |
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