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Mapping of Brain Substantia Nigra Histone H3K4me1 ChIP-Seq Data
Illumina reads produced by Histone H3K4me1 ChIP-Seq on Brain Substantia Nigra, Donor 112 were mapped to the human genome using Pash.
Project News:
2011/3/17: ANALYSIS XML file 'bi.chip-seq.level.1.release.3.xml' uploaded
alias: Lib:XZ:20100921:01--ChIP:XZ:20100914:01:substantia nigra:H3K4Me1.hg19.level.1.release.3
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: BI.Brain_Substantia_Nigra.H3K4me1.112.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 10 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. ALIGNMENT_POSTPROCESSING: None READ_EXTENSION: 200bp RELEASE_NUMBER: Human Epigenome Atlas 3 NUMBER_OF_H3K4me1_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 50 FINDPEAKS_SCORE: 0.1215 FINDPEAKS_PERCENTILE: 25 HOTSPOT_SCORE: 0.2177 HOTSPOT_PERCENTILE: 25 IROC_SCORE: 0.9255 IROC_PERCENTILE: 21 POISSON_SCORE: 0.3937 POISSON_PERCENTILE: 25 |
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