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Mapping of Adipose Derived Mesenchymal Stem Cell Cultured Cells Histone H3K9ac ChIP-Seq Data
Illumina reads produced by Histone H3K9ac ChIP-Seq on Adipose Derived Mesenchymal Stem Cell Cultured Cells, Donor 1 were mapped to the human genome using Pash.


Project News:
2011/3/17:
ANALYSIS XML file 'bi.chip-seq.level.1.release.3.xml' uploaded



alias: Lib:XZ:20100827:09--ChIP:XZ:20100824:09:ADMSC:H3K9Ac-Lib:XZ:20100107:06--ChIP:XZ:20100104:04:ADMSC:H3K9Ac.hg19.level.1.release.3
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: BI.Adipose_Derived_Mesenchymal_Stem_Cell_Cultured_Cells.H3K9ac.1.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 3
NUMBER_OF_H3K9ac_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 40
FINDPEAKS_SCORE: 0.5254
FINDPEAKS_PERCENTILE: 96
HOTSPOT_SCORE: 0.5474
HOTSPOT_PERCENTILE: 96
IROC_SCORE: 0.9974
IROC_PERCENTILE: 84
POISSON_SCORE: 0.5802
POISSON_PERCENTILE: 96

 

 


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