|
|||||||||
Mapping of Adipose Nuclei Histone H3K4me3 ChIP-Seq Data
Illumina reads produced by Histone H3K4me3 ChIP-Seq on Adipose Nuclei, Donor 95 were mapped to the human genome using Pash.
Project News:
2011/3/17: ANALYSIS XML file 'bi.chip-seq.level.1.release.3.xml' uploaded
alias: Lib:XZ:20100731:23--ChIP:XZ:20100726:23:AdiposeNuclei:H3K4Me3.hg19.level.1.release.3
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: BI.Adipose_Nuclei.H3K4me3.95.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: ChIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 10 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained. ALIGNMENT_POSTPROCESSING: None READ_EXTENSION: 200bp RELEASE_NUMBER: Human Epigenome Atlas 3 NUMBER_OF_H3K4me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 63 FINDPEAKS_SCORE: 0.503 FINDPEAKS_PERCENTILE: 68 HOTSPOT_SCORE: 0.5141 HOTSPOT_PERCENTILE: 68 IROC_SCORE: 0.9959 IROC_PERCENTILE: 36 POISSON_SCORE: 0.5483 POISSON_PERCENTILE: 68 |
|||||||||
|
|||||||||