Genboree BCM
Help Genboree Home
(This is a recently added feature. Report issues to Genboree Admin.)
Raw Signal Density Graphs of iPS DF 19.11 Cell Line Chromatin Accessibility Data
Illumina DNAse-Seq read mappings from the iPS DF 19.11 Cell Line, Library DS15153 were processed into density graphs of raw signal representing the aligned read density.


Project News:
2011/3/17:
ANALYSIS XML file 'uw.chromatin.accessibility.level.2.release.3.xml' uploaded



alias: DS15153.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UW.iPS_DF_19.11.ChromatinAccessibility.DS15153.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 150bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 3
BROWSER_TRACK_NAME: iD1 DNase 53 53
BROWSER_TRACK_DESCRIPTION: UW iPS DF 19.11 Cell Line DNase Hypersensitivity Library DS15153 EA Release 3
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 39
FINDPEAKS_SCORE: 0.2874
FINDPEAKS_PERCENTILE: 18
HOTSPOT_SCORE: 0.3406
HOTSPOT_PERCENTILE: 33
IROC_SCORE: 0.9933
IROC_PERCENTILE: 41
POISSON_SCORE: 0.394
POISSON_PERCENTILE: 26

 

 


Bioinformatics Research Laboratory © 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030)