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Mapping of CD8 Primary Cells Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on CD8 Primary Cells, Donor RO 01721, Library DS17203 were mapped to the human genome using Pash.
Project News:
2011/3/17: ANALYSIS XML file 'uw.chromatin.accessibility.level.1.release.3.xml' uploaded
alias: DS17203.hg19.level.1.release.3
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UW.CD8_Primary_Cells.ChromatinAccessibility.RO_01721.DS17203.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: Chromatin Accessibility GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 10 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None ALIGNMENT_POSTPROCESSING: None RELEASE_NUMBER: Human Epigenome Atlas 3 NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 39 FINDPEAKS_SCORE: 0.6535 FINDPEAKS_PERCENTILE: 100 HOTSPOT_SCORE: 0.6695 HOTSPOT_PERCENTILE: 100 IROC_SCORE: 0.9962 IROC_PERCENTILE: 79 POISSON_SCORE: 0.626 POISSON_PERCENTILE: 95 |
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