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Mapping of iPS DF 19.11 Cell Line Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on the iPS DF 19.11 Cell Line, Library DS15153 were mapped to the human genome using Pash.


Project News:
2011/3/17:
ANALYSIS XML file 'uw.chromatin.accessibility.level.1.release.3.xml' uploaded



alias: DS15153.hg19.level.1.release.3
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.iPS_DF_19.11.ChromatinAccessibility.DS15153.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 3
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 39
FINDPEAKS_SCORE: 0.2874
FINDPEAKS_PERCENTILE: 18
HOTSPOT_SCORE: 0.3406
HOTSPOT_PERCENTILE: 33
IROC_SCORE: 0.9933
IROC_PERCENTILE: 41
POISSON_SCORE: 0.394
POISSON_PERCENTILE: 26

 

 


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