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Mapping of Fetal Thymus Chromatin Accessibility Data
Illumina reads produced by DNAse-Seq on Fetal Thymus, Donor H-23589, Library DS16490 were mapped to the human genome using Pash.
Project News:
2011/3/17:
ANALYSIS XML file 'uw.chromatin.accessibility.level.1.release.3.xml' uploaded
alias: DS16490.hg19.level.1.release.3
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Thymus.ChromatinAccessibility.H-23589.DS16490.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 3
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 39
FINDPEAKS_SCORE: 0.304
FINDPEAKS_PERCENTILE: 26
HOTSPOT_SCORE: 0.301
HOTSPOT_PERCENTILE: 15
IROC_SCORE: 0.9963
IROC_PERCENTILE: 82
POISSON_SCORE: 0.3506
POISSON_PERCENTILE: 8
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UW.Fetal_Thymus.ChromatinAccessibility.H-23589.DS16490.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: Chromatin Accessibility
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 3
NUMBER_OF_CHROMATIN_ACCESSIBILITY_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 39
FINDPEAKS_SCORE: 0.304
FINDPEAKS_PERCENTILE: 26
HOTSPOT_SCORE: 0.301
HOTSPOT_PERCENTILE: 15
IROC_SCORE: 0.9963
IROC_PERCENTILE: 82
POISSON_SCORE: 0.3506
POISSON_PERCENTILE: 8
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