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Methylation Proportion Graphs of H1 Derived Neuronal Progenitor Cultured Cells Bisulfite-Seq Data
Illumina Bisulfite-Seq read mappings from H1 Derived Neuronal Progenitor Cultured Cells, Library methylC-seq_h1-npc_r1b were processed into graphs of methylation proportions. Methylation proportions were calculated as (methylated calls / (methylated calls + unmethylated calls)) for all CpGs covered by at least 4 reads. Reads from the + and - strands were combined for methylation proportion calculations.
Project News:
2011/3/16:
ANALYSIS XML file 'ucsd.bisulfite-seq.level.2.release.3.xml' uploaded
alias: methylC-seq_h1-npc_r1b.hg19.level.2.release.3
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H1_Derived_Neuronal_Progenitor_Cultured_Cells.Bisulfite-Seq.methylC-seq_h1-npc_r1b.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Bisulfite-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 2bp containing CpGs
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 3
BROWSER_TRACK_NAME: HDNP BS 1b
BROWSER_TRACK_DESCRIPTION: UCSD H1 Derived Neuronal Progenitor Cultured Cells Bisulfite-Seq Library methylC-seq_h1-npc_r1b EA Release 3
NUMBER_OF_Bisulfite-Seq_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 5
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 98.86
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS_PERCENTILE: 40
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSD.H1_Derived_Neuronal_Progenitor_Cultured_Cells.Bisulfite-Seq.methylC-seq_h1-npc_r1b.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Bisulfite-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
GENOMIC_WINDOW: 2bp containing CpGs
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 3
BROWSER_TRACK_NAME: HDNP BS 1b
BROWSER_TRACK_DESCRIPTION: UCSD H1 Derived Neuronal Progenitor Cultured Cells Bisulfite-Seq Library methylC-seq_h1-npc_r1b EA Release 3
NUMBER_OF_Bisulfite-Seq_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 5
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 98.86
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS_PERCENTILE: 40
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