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Mapping of Neurosphere Cultured Cells Ganglionic Eminence Derived MeDIP-Seq Data
Illumina reads produced by MeDIP-Seq on Neurosphere Cultured Cells Ganglionic Eminence Derived, Donor HuFNSC01 were mapped to the human genome using Pash.
Project News:
2011/3/16:
ANALYSIS XML file 'ucsf-ubc.medip.level.1.release.3.xml' uploaded
alias: HS2777-1.hg19.level.1.release.3
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.MeDIP-Seq.HuFNSC01.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 3
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 10
FINDPEAKS_SCORE: 0.1089
FINDPEAKS_PERCENTILE: 60
HOTSPOT_SCORE: 0.2684
HOTSPOT_PERCENTILE: 60
IROC_SCORE: 0.9012
IROC_PERCENTILE: 60
POISSON_SCORE: 0.4185
POISSON_PERCENTILE: 60
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Neurosphere_Cultured_Cells_Ganglionic_Eminence_Derived.MeDIP-Seq.HuFNSC01.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 3
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 10
FINDPEAKS_SCORE: 0.1089
FINDPEAKS_PERCENTILE: 60
HOTSPOT_SCORE: 0.2684
HOTSPOT_PERCENTILE: 60
IROC_SCORE: 0.9012
IROC_PERCENTILE: 60
POISSON_SCORE: 0.4185
POISSON_PERCENTILE: 60
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