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Mapping of CD4 Naive Primary Cells MeDIP-Seq Data
Illumina reads produced by MeDIP-Seq on CD4 Naive Primary Cells, Donor TC009 were mapped to the human genome using Pash.
Project News:
2011/3/16: ANALYSIS XML file 'ucsf-ubc.medip.level.1.release.3.xml' uploaded
alias: HS2751-1.hg19.level.1.release.3
Analysis Center: EDACC Analysis File Type: .bed Analysis File Name: UCSF-UBC.CD4_Naive_Primary_Cells.MeDIP-Seq.TC009.bed DATA_ANALYSIS_LEVEL: 1 EXPERIMENT_TYPE: MeDIP-Seq GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 SOFTWARE: Pash SOFTWARE_VERSION: 3.0 MAXIMUM_ALIGNMENT_LENGTH: Read length MISMATCHES_ALLOWED: 10% of read length ALIGNMENTS_ALLOWED: 10 TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration. TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None ALIGNMENT_POSTPROCESSING: None RELEASE_NUMBER: Human Epigenome Atlas 3 NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 10 FINDPEAKS_SCORE: 0.0173 FINDPEAKS_PERCENTILE: 20 HOTSPOT_SCORE: 0.1658 HOTSPOT_PERCENTILE: 20 IROC_SCORE: 0.7651 IROC_PERCENTILE: 20 POISSON_SCORE: 0.3315 POISSON_PERCENTILE: 20 |
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