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Mapping of CD4 Naive Primary Cells MeDIP-Seq Data
Illumina reads produced by MeDIP-Seq on CD4 Naive Primary Cells, Donor TC009 were mapped to the human genome using Pash.


Project News:
2011/3/16:
ANALYSIS XML file 'ucsf-ubc.medip.level.1.release.3.xml' uploaded



alias: HS2751-1.hg19.level.1.release.3
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.CD4_Naive_Primary_Cells.MeDIP-Seq.TC009.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: MeDIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 3
NUMBER_OF_MEDIP-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 10
FINDPEAKS_SCORE: 0.0173
FINDPEAKS_PERCENTILE: 20
HOTSPOT_SCORE: 0.1658
HOTSPOT_PERCENTILE: 20
IROC_SCORE: 0.7651
IROC_PERCENTILE: 20
POISSON_SCORE: 0.3315
POISSON_PERCENTILE: 20

 

 


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