Genboree BCM
Help Genboree Home
(This is a recently added feature. Report issues to Genboree Admin.)
Mapping of Breast Luminal Epithelial Cells mRNA-Seq Data
Illumina reads produced by mRNA-Seq on Breast Luminal Epithelial Cells, Donor RM080 were mapped to the human genome using Pash.


Project News:
2011/3/16:
ANALYSIS XML file 'ucsf-ubc.mrna-seq.level.1.release.3.xml' uploaded



alias: A01029-1.hg19.level.1.release.3
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSF-UBC.Breast_Luminal_Epithelial_Cells.mRNA-Seq.RM080.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: mRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
ALIGNMENT_POSTPROCESSING: None
RELEASE_NUMBER: Human Epigenome Atlas 3
NUMBER_OF_MRNA-SEQ_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 7
PERCENT_READS_MAPPING_TO_UCSC_GENES: 92.6
PERCENT_READS_MAPPING_TO_UCSC_GENES_PERCENTILE: 43

 

 


Bioinformatics Research Laboratory © 2001-2024 Baylor College of Medicine
Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030)