|
|
| Home | Browser | Tools | Log Out |
Help
|
Mapping of H9 Cell Line Histone H3K27me3 ChIP-Seq Data
Illumina reads produced by Histone H3K27me3 ChIP-Seq on the H9 Cell Line, Library SK99 were mapped to the human genome using Pash.
Project News:
2011/3/16:
ANALYSIS XML file 'ucsd-chip-seq.level.1.release.3.xml' uploaded
alias: renlab.H3K27me3.hESC.H9.01.01.hg19.level.1.release.3
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSD.H9.H3K27me3.SK99.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 3
NUMBER_OF_H3K27me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 20
FINDPEAKS_SCORE: 0.2484
FINDPEAKS_PERCENTILE: 80
HOTSPOT_SCORE: 0.3339
HOTSPOT_PERCENTILE: 85
IROC_SCORE: 0.9276
IROC_PERCENTILE: 80
POISSON_SCORE: 0.3684
POISSON_PERCENTILE: 60
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSD.H9.H3K27me3.SK99.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 3
NUMBER_OF_H3K27me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 20
FINDPEAKS_SCORE: 0.2484
FINDPEAKS_PERCENTILE: 80
HOTSPOT_SCORE: 0.3339
HOTSPOT_PERCENTILE: 85
IROC_SCORE: 0.9276
IROC_PERCENTILE: 80
POISSON_SCORE: 0.3684
POISSON_PERCENTILE: 60
|
Genboree is built & maintained by the Bioinformatics Research Laboratory
at Baylor College of Medicine.
Genboree is a hosted service. Code is available
free for academic use.
|
|
|
© 2001-2013 Bioinformatics Research Laboratory
(400D Jewish Wing, MS:BCM225, 1 Baylor Plaza, Houston, TX 77030, 713-798-5433) |
|