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Mapping of H9 Cell Line ChIP-Seq Input Data
Illumina reads produced by ChIP-Seq Input on the H9 Cell Line, Library SKH9-4 were mapped to the human genome using Pash.
Project News:
2011/3/16:
ANALYSIS XML file 'ucsd-chip-seq.level.1.release.3.xml' uploaded
alias: renlab.Input.hESC.H9.01.01.hg19.level.1.release.3
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSD.H9.Input.SKH9-4.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 3
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 30
FINDPEAKS_SCORE: 0.0124
FINDPEAKS_PERCENTILE: 93
HOTSPOT_SCORE: 0.0778
HOTSPOT_PERCENTILE: 90
IROC_SCORE: 0.9959
IROC_PERCENTILE: 59
POISSON_SCORE: 0.0966
POISSON_PERCENTILE: 87
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSD.H9.Input.SKH9-4.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 3
NUMBER_OF_Input_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 30
FINDPEAKS_SCORE: 0.0124
FINDPEAKS_PERCENTILE: 93
HOTSPOT_SCORE: 0.0778
HOTSPOT_PERCENTILE: 90
IROC_SCORE: 0.9959
IROC_PERCENTILE: 59
POISSON_SCORE: 0.0966
POISSON_PERCENTILE: 87
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