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Mapping of H9 Cell Line Histone H3K9me3 ChIP-Seq Data
Illumina reads produced by Histone H3K9me3 ChIP-Seq on the H9 Cell Line, Library AK40 were mapped to the human genome using Pash.
Project News:
2011/3/16:
ANALYSIS XML file 'ucsd-chip-seq.level.1.release.3.xml' uploaded
alias: renlab.H3K9me3.hESC.H9.03.01.hg19.level.1.release.3
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSD.H9.H3K9me3.AK40.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 3
NUMBER_OF_H3K9me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 26
FINDPEAKS_SCORE: 0.0402
FINDPEAKS_PERCENTILE: 38
HOTSPOT_SCORE: 0.1465
HOTSPOT_PERCENTILE: 58
IROC_SCORE: 0.7488
IROC_PERCENTILE: 19
POISSON_SCORE: 0.3359
POISSON_PERCENTILE: 62
Analysis Center: EDACC
Analysis File Type: .bed
Analysis File Name: UCSD.H9.H3K9me3.AK40.bed
DATA_ANALYSIS_LEVEL: 1
EXPERIMENT_TYPE: ChIP-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: Pash
SOFTWARE_VERSION: 3.0
MAXIMUM_ALIGNMENT_LENGTH: Read length
MISMATCHES_ALLOWED: 10% of read length
ALIGNMENTS_ALLOWED: 10
TREATMENT_OF_MULTIPLE_ALIGNMENTS: If a read maps to more than 10 positions it is removed from consideration.
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: If multiple reads map to the same start position on the + strand or stop position on the - strand, only a single read is retained.
ALIGNMENT_POSTPROCESSING: None
READ_EXTENSION: 200bp
RELEASE_NUMBER: Human Epigenome Atlas 3
NUMBER_OF_H3K9me3_EXPERIMENTS_SCORED_IN_THIS_RELEASE: 26
FINDPEAKS_SCORE: 0.0402
FINDPEAKS_PERCENTILE: 38
HOTSPOT_SCORE: 0.1465
HOTSPOT_PERCENTILE: 58
IROC_SCORE: 0.7488
IROC_PERCENTILE: 19
POISSON_SCORE: 0.3359
POISSON_PERCENTILE: 62
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