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Methylation Proportion Graphs of iPS-17b Cell Line RRBS Data
Illumina RRBS read mappings from the iPS-17b Cell Line, Libraries RRBS589-590 were processed into graphs of methylation proportions. Methylation proportions were calculated as (methylated calls / (methylated calls + unmethylated calls)) for all CpGs covered by at least 4 reads.
Project News:
2010/11/7:
ANALYSIS XML file 'bi.rrbs.level.2.xml' uploaded
alias: RRBS589-RRBS590.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.iPS-17b.RRBS.RRBS589-590.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Reduced Representation Bisulfite-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 MspI restriction fragments 40-220bp
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
GENOMIC_WINDOW: 2bp containing CpGs
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: iPS17b RRBS 89
BROWSER_TRACK_DESCRIPTION: BI iPS-17b Cell Line RRBS Libraries RRBS589-590 EA Release 2
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 98.16
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: BI.iPS-17b.RRBS.RRBS589-590.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: Reduced Representation Bisulfite-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19 MspI restriction fragments 40-220bp
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
TREATMENT_OF_IDENTICAL_ALIGNMENTS_OF_MULTIPLE_READS: None
GENOMIC_WINDOW: 2bp containing CpGs
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: iPS17b RRBS 89
BROWSER_TRACK_DESCRIPTION: BI iPS-17b Cell Line RRBS Libraries RRBS589-590 EA Release 2
BISULFITE_CONVERSION_PERCENTAGE_BASED_ON_MAPPINGS: 98.16
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