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Raw Signal Density Graphs of H1 Cell Line smRNA-Seq Data
Illumina smRNA-Seq read mappings from the H1 Cell Line, Library H1EScd1 batch2 vial1 were processed into density graphs of raw signal representing the aligned read density.
Project News:
2010/11/5:
ANALYSIS XML file 'ucsf-ubc.smrna-seq.level.1-2.xml' uploaded
alias: HS1295-1_42ERCAAXX.hg19.level.2
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.H1.smRNA-Seq.H1EScd1_batch2_vial1.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: smRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: H1 smRNA l1
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-UCD H1 Cell Line smRNA-Seq Library H1EScd1 batch2 vial1 EA Release 2
PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA: 24.4
PERCENT_READS_MAPPING_TO_REPEATMASKER_RNA_REPEATS: 34.9
Analysis Center: EDACC
Analysis File Type: .wig
Analysis File Name: UCSF-UBC.H1.smRNA-Seq.H1EScd1_batch2_vial1.wig
DATA_ANALYSIS_LEVEL: 2
EXPERIMENT_TYPE: smRNA-Seq
GENOME_ASSEMBLY: NCBI Build GRCh37/UCSC Build hg19
SOFTWARE: In house programs and scripts
SOFTWARE_VERSION: NA
READ_EXTENSION: 0bp
GENOMIC_WINDOW: 20bp
TREATMENT_OF_REGIONS_PRONE_TO_MULTIPLE_ALIGNMENTS: None
RELEASE_NUMBER: Human Epigenome Atlas 2
BROWSER_TRACK_NAME: H1 smRNA l1
BROWSER_TRACK_DESCRIPTION: UCSF-UBC-UCD H1 Cell Line smRNA-Seq Library H1EScd1 batch2 vial1 EA Release 2
PERCENT_READS_MAPPING_TO_miRBase_v16_miRNA: 24.4
PERCENT_READS_MAPPING_TO_REPEATMASKER_RNA_REPEATS: 34.9
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